| RNAi Experiment: Simmer:ZK131.3 |
Ace View of Simmer:ZK131.3
|
| Genes Inhibited |
 |
| Gene Inhibited |
ZK131.3 (his-9) |
| Description of "ZK131.3" |
his-9 encodes an H3 histone; by homology, HIS-9 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-9 is a replication-dependent histone locus that resides in the HIS3 cluster on chromosome II. |
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (II:13823307..13824243)
Transcript overlap: 411 nt |
|
| Sliding Window |
Raw score: 369
Relative score: 0.946 (Best raw score= for Gene )
Specificity index: 0.242 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "ZK131.3" Links |
  |
| Gene Inhibited |
B0035.10 (his-45) |
| Description of "B0035.10" |
his-45 encodes an H3 histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 71
Relative score: 0.182 (Best raw score= for Gene )
Specificity index: 0.046 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "B0035.10" Links |
|
| Gene Inhibited |
F08G2.3 (his-42) |
| Description of "F08G2.3" |
his-42 encodes an H3 histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 307
Relative score: 0.787 (Best raw score= for Gene )
Specificity index: 0.201 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F08G2.3" Links |
|
| Gene Inhibited |
ZK131.7 (his-13) |
| Description of "ZK131.7" |
his-13 encodes an H3 histone; his-13 is contained within the histone gene cluster HIS3. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 390
Specificity index: 0.255 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "ZK131.7" Links |
|
| Gene Inhibited |
ZK131.2 (his-25) |
| Description of "ZK131.2" |
his-25 encodes an H3 histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 390
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.255 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "ZK131.2" Links |
|
| Simmer:ZK131.3 Phenotypes |
|
|
| Embryonic |
Emb Penetrance 50 - 80 % |
| Larval |
Lva
|
| Adult |
Bmd
|
| Simmer:ZK131.3 Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_ZK131.3 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of F08G2.3 |
Browse using GBrowse
|
 |
| Gene Plot of B0035.10 |
Browse using GBrowse
|
 |
| Gene Plot of ZK131.2 |
Browse using GBrowse
|
 |
| Gene Plot of ZK131.7 |
Browse using GBrowse
|
 |
| Gene Plot of ZK131.3 |
Browse using GBrowse
|
 |
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