| RNAi Experiment: Simmer:ZK131.5 |
Ace View of Simmer:ZK131.5
|
| Genes Inhibited |
 |
| Gene Inhibited |
ZK131.5 (his-11) |
| Description of "ZK131.5" |
his-11 encodes an H2B histone; by homology, HIS-11 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-11 is a replication-dependent histone locus that resides in the HIS3 cluster on chromosome II. |
| Evidence for Inhibition |
| ePCR |
Status: Best_ePCR (II:13821650..13822260)
Transcript overlap: 462 nt |
|
| Sliding Window |
Raw score: 424
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.282 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "ZK131.5" Links |
  |
| Gene Inhibited |
ZK131.9 (his-15) |
| Description of "ZK131.9" |
his-15 encodes an H2B histone. |
| Evidence for Inhibition |
| ePCR |
Status: Top50_percentile_ePCR (II:13818212..13818822)
Transcript overlap: 369 nt |
|
| Sliding Window |
Raw score: 348
Relative score: 0.821 (Best raw score= for Gene )
Specificity index: 0.232 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "ZK131.9" Links |
|
| Gene Inhibited |
F08G2.1 (his-44) |
| Description of "F08G2.1" |
his-44 encodes an H2B histone. |
| Evidence for Inhibition |
| ePCR |
Status: Top50_percentile_ePCR (II:13826445..13827055)
Transcript overlap: 369 nt |
|
| Sliding Window |
Raw score: 348
Specificity index: 0.232 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F08G2.1" Links |
|
| Gene Inhibited |
F54E12.4 (his-58) |
| Description of "F54E12.4" |
his-58 encodes an H2B histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 65
Relative score: 0.153 (Best raw score= for Gene )
Specificity index: 0.043 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F54E12.4" Links |
|
| Gene Inhibited |
F17E9.9 (his-34) |
| Description of "F17E9.9" |
his-34 encodes an H2B histone; his-34 is contained within the histone gene cluster HIS5. |
| KOG Annotation |
Histone H2B
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 92
Specificity index: 0.061 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F17E9.9" Links |
|
| Gene Inhibited |
H02I12.6 (his-66) |
| Description of "H02I12.6" |
his-66 encodes an H2B histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 62
Relative score: 0.146 (Best raw score= for Gene )
Specificity index: 0.041 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "H02I12.6" Links |
|
| Gene Inhibited |
F35H10.11 (his-29) |
| Description of "F35H10.11" |
his-29 encodes an H2B histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 92
Relative score: 0.217 (Best raw score= for Gene )
Specificity index: 0.061 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F35H10.11" Links |
|
| Gene Inhibited |
B0035.8 (his-48) |
| Description of "B0035.8" |
his-48 encodes an H2B histone; by homology, HIS-48 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-48 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 72
Relative score: 0.17 (Best raw score= for Gene )
Specificity index: 0.048 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "B0035.8" Links |
|
| Simmer:ZK131.5 Phenotypes |
|
|
| Embryonic |
Emb Penetrance 100 % |
| Simmer:ZK131.5 Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_ZK131.5 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of F54E12.4 |
Browse using GBrowse
|
 |
| Gene Plot of F08G2.1 |
Browse using GBrowse
|
 |
| Gene Plot of F17E9.9 |
Browse using GBrowse
|
 |
| Gene Plot of ZK131.5 |
Browse using GBrowse
|
 |
| Gene Plot of F35H10.11 |
Browse using GBrowse
|
 |
| Gene Plot of H02I12.6 |
Browse using GBrowse
|
 |
| Gene Plot of ZK131.9 |
Browse using GBrowse
|
 |
| Gene Plot of B0035.8 |
Browse using GBrowse
|
 |
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