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RNAi Experiment: Simmer:ZK792.3 Ace View of Simmer:ZK792.3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  ZK792.3 (inx-9)
Description of "ZK792.3"  inx-9 encodes an innexin, an integral transmembrane channel protein that is a structural component of invertebrate gap junctions; although the precise role of INX-9 in C. elegans development and/or behavior is not yet known, INX-9 may play a role in gonad or germline development, as INX-9 expression is detected solely in the sheath cells of the somatic gonad and particularly, the sheath cells in contact with proximal oocytes.
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:11676164..11677820)
Transcript overlap: 902 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 839
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.788
Wormbase (BLAST) RNAi primary
External "ZK792.3" Links  Wormbase NCBI
Gene Inhibited  ZK792.2 (inx-8)
Description of "ZK792.2"  inx-8 encodes a predicted member of the innexin family that affects fertility; expressed in sheath cells.
Evidence for Inhibition 
Sliding Window Raw score: 226
Relative score: 0.269 (Best raw score= for Gene )
Specificity index: 0.212
Wormbase (BLAST) RNAi secondary
External "ZK792.2" Links  Wormbase NCBI
Simmer:ZK792.3 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 20 - 40 %
Adult  Ste brood size (6 out of 10)
Simmer:ZK792.3 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_ZK792.3 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of ZK792.2 Browse using GBrowse
Gene Graph
Gene Plot of ZK792.3 Browse using GBrowse
Gene Graph