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RNAi Experiment: TH:300F3 Ace View of TH:300F3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  R07E5.3
Description of "R07E5.3"  The R07E5.3 gene encodes a homolog of SNF5/Ini1, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; R07E5.3 may be involved in asymmetric cell division of the T cells.
KOG Annotation  SWI-SNF chromatin remodeling complex, Snf5 subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:4403843..4406009)
Transcript overlap: 1113 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1029
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.74
Wormbase (BLAST) RNAi primary
External "R07E5.3" Links  Wormbase NCBI
Gene Inhibited  R07E5.17
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:4403843..4406009)
Transcript overlap: 404 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 362
Relative score: 0.352 (Best raw score= for Gene )
Specificity index: 0.26
Wormbase (BLAST) RNAi primary
External "R07E5.17" Links  Wormbase NCBI
TH:300F3 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
TH:300F3 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:300F3 (PCR_reagent)
Remark  Phenotype comment -- Not yet confirmed by independent RNA
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Date  2000-11-16
Gene Plot of R07E5.17 Browse using GBrowse
Gene Graph
Gene Plot of R07E5.3 Browse using GBrowse
Gene Graph