Link to B0393.1.1Link to B0393.1.2Link to B0393.2.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to B0393.8RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F22D6.14Link to VB0393L.2Link to F31E3.6Link to C29A12.1geneMap Link to F22D6.7Link to F22D6.9RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F22D6.6Link to F22D6.14RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F31E3.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to B0393.8Link to VB0393L.2Link to C29A12.1Link to F22D6.14geneMap Link to VB0393L.2RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to B0393.8Link to F31E3.6Link to C29A12.1Link to F22D6.14geneMap
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RNAi Experiment: TH:300b9 Ace View of TH:300b9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  B0393.1 (rps-0)
Description of "B0393.1"  rps-0 encodes a small ribosomal subunit SA protein that appears to function as both a ribosomal component and a laminin receptor; by homology, RPS-0 is predicted to play roles in protein biosynthesis and cell adhesion; in C. elegans, RPS-0 activity is required for embryonic and germline development, vulval morphogenesis, and the overall health of the animal.
KOG Annotation  40S ribosomal protein SA (P40)/Laminin receptor 1
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:4752152..4754209)
Transcript overlap: 888 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 804
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.626
Wormbase (BLAST) RNAi primary
External "B0393.1" Links  Wormbase NCBI
Gene Inhibited  B0393.8
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:4752152..4754209)
Transcript overlap: 137 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 74
Relative score: 0.098 (Best raw score= for Gene )
Specificity index: 0.062
Wormbase (BLAST) RNAi primary
External "B0393.8" Links  Wormbase NCBI
Gene Inhibited  F22D6.7
Evidence for Inhibition 
Sliding Window Raw score: 82
Relative score: 0.109 (Best raw score= for Gene )
Specificity index: 0.068
External "F22D6.7" Links  Wormbase NCBI
Gene Inhibited  F22D6.6 (ekl-1)
Description of "F22D6.6"  Associated GO Term : nucleic acid binding
Evidence for Inhibition 
Sliding Window Raw score: 80
Relative score: 0.106 (Best raw score= for Gene )
Specificity index: 0.067
External "F22D6.6" Links  Wormbase NCBI
Gene Inhibited  F31E3.6
Evidence for Inhibition 
Sliding Window Raw score: 118
Relative score: 0.157 (Best raw score= for Gene )
Specificity index: 0.098
External "F31E3.6" Links  Wormbase NCBI
Gene Inhibited  VB0393L.2
Evidence for Inhibition 
Sliding Window Raw score: 95
Relative score: 0.126 (Best raw score= for Gene )
Specificity index: 0.079
External "VB0393L.2" Links  Wormbase NCBI
TH:300b9 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Adult  Ste
TH:300b9 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:300b9 (PCR_reagent)
Remark  Phenotype comment -- Semi-sterile. Phenotype confimed by independent dsRNA (B0393.1-RNA2; similar phenotype).
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Date  2000-11-16
Gene Plot of F22D6.7 Browse using GBrowse
Gene Graph
Gene Plot of F22D6.6 Browse using GBrowse
Gene Graph
Gene Plot of B0393.8 Browse using GBrowse
Gene Graph
Gene Plot of B0393.1 Browse using GBrowse
Gene Graph
Gene Plot of F31E3.6 Browse using GBrowse
Gene Graph
Gene Plot of VB0393L.2 Browse using GBrowse
Gene Graph