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RNAi Experiment: TH:309g1 Ace View of TH:309g1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C16A3.9 (rps-13)
Description of "C16A3.9"  rps-13 encodes a small ribosomal subunit S13 protein; by homology, RPS-13 is predicted to function in protein biosynthesis; in C. elegans, RPS-13 activity is required for embryonic and germline development.
KOG Annotation  40S ribosomal protein S13
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:6373957..6375085)
Transcript overlap: 510 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 447
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.857
Wormbase (BLAST) RNAi primary
External "C16A3.9" Links  Wormbase NCBI
Gene Inhibited  F52C6.13
Evidence for Inhibition 
Sliding Window Raw score: 65
Relative score: 0.168 (Best raw score= for Gene )
Specificity index: 0.143
External "F52C6.13" Links  Wormbase NCBI
TH:309g1 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
TH:309g1 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:309g1 (PCR_reagent)
Remark  DIC phenotype -- Multiple female pronuclei; irregular cytoplasmic appearance; aberrant pseudocleavage stage; karyomeres in daughter blastomeres; nuclei in AB are off-center for a while, nuclei in P1 stay close to posterior cortex for a while.
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Date  2000-11-16
Gene Plot of C16A3.9 Browse using GBrowse
Gene Graph
Gene Plot of F52C6.13 Browse using GBrowse
Gene Graph