RNAi Experiment: TH:313G1 |
Ace View of TH:313G1
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Genes Inhibited |
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Gene Inhibited |
R07E5.3 |
Description of "R07E5.3" |
The R07E5.3 gene encodes a homolog of SNF5/Ini1, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; R07E5.3 may be involved in asymmetric cell division of the T cells. |
KOG Annotation  |
SWI-SNF chromatin remodeling complex, Snf5 subunit
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Evidence for Inhibition |
ePCR |
Status: Best_ePCR (III:4406188..4407105)
Transcript overlap: 561 nt |
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Sliding Window |
Raw score: 477
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.522 |
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External "R07E5.3" Links |
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Gene Inhibited |
R07E5.14 (rnp-4) |
Description of "R07E5.14" |
rnp-4 encodes a putative member of the exon-exon junction complex, orthologous to Y14 in S. cerevisiae and TSUNAGI in D. melanogaster; RNP-4 is required for embryonic viability, fertility, vulval development, and cuticular integrity; however, rnp-4(RNAi) animals show no accumulation of poly(A)+ mRNA in their nuclei, indicating that RNP-4 is dispensable for mRNA export. |
KOG Annotation  |
RNA-binding protein RBM8/Tsunagi (RRM superfamily)
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Evidence for Inhibition |
ePCR |
Status: Top85_percentile_ePCR (III:4406188..4407105)
Transcript overlap: 500 nt |
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Sliding Window |
Raw score: 437
Relative score: 0.916 (Best raw score= for Gene )
Specificity index: 0.478 |
Wormbase (BLAST) |
RNAi primary |
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External "R07E5.14" Links |
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TH:313G1 Phenotypes |
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Phenotype |
WTDIC phenotype -- Embryonic development normal
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TH:313G1 Experiment Details |
Ace View |
Laboratory |
TH |
RNAi Reagent & Type |
TH:313G1 (PCR_reagent) |
Reference |
Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...." |
Delivery Method |
Injection |
Date |
2000-11-16 |
Gene Plot of R07E5.14 |
Browse using GBrowse
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Gene Plot of R07E5.3 |
Browse using GBrowse
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