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RNAi Experiment: TH:314D6 Ace View of TH:314D6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  R13A5.11
Description of "R13A5.11"  Associated GO Term : hydrolase activity
KOG Annotation  Serine/threonine specific protein phosphatase PP1, catalytic subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:7591429..7593103)
Transcript overlap: 1259 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1154
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.684
Wormbase (BLAST) RNAi primary
External "R13A5.11" Links  Wormbase NCBI
Gene Inhibited  R13A5.1 (cup-5)
Description of "R13A5.1"  The cup-5 gene encodes an ortholog of the human mucolipin-1 gene, and is required for the normal, negative regulation of endocytotic uptake of markers from pseudocoelomic fluid.
Evidence for Inhibition 
ePCR Transcript overlap: 55 nt Explain types of evidence for RNAi inhibition
External "R13A5.1" Links  Wormbase NCBI
Gene Inhibited  C30A5.4
Description of "C30A5.4"  Associated GO Term : hydrolase activity
KOG Annotation  Serine/threonine specific protein phosphatase PP1, catalytic subunit
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 534
Relative score: 0.463 (Best raw score= for Gene )
Specificity index: 0.316
External "C30A5.4" Links  Wormbase NCBI
TH:314D6 Phenotypes Help with Phenotypes
Phenotype  WTDIC phenotype -- Embryonic development normal
TH:314D6 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:314D6 (PCR_reagent)
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Delivery Method  Injection
Date  2000-11-16
Gene Plot of R13A5.11 Browse using GBrowse
Gene Graph
Gene Plot of R13A5.1 Browse using GBrowse
Gene Graph
Gene Plot of C30A5.4 Browse using GBrowse
Gene Graph