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RNAi Experiment: TH:320A6 Ace View of TH:320A6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F02A9.6 (glp-1)
Description of "F02A9.6"  glp-1 encodes an N-glycosylated transmembrane protein that, along with LIN-12, comprises one of two C. elegans members of the LIN-12/Notch family of receptors; from the N- to the C-terminus, GLP-1 is characterized by ten extracellular EGF-like repeats, three LIN-12/Notch repeats, a CC-linker, a transmembrane domain, a RAM domain, six intracellular ankyrin repeats, and a PEST sequence; in C. elegans, GLP-1 activity is required for cell fate specification in germline and somatic tissues; in the germline, GLP-1, acting as a receptor for the DSL family ligand LAG-2, is essential for mitotic proliferation of germ cells and maintenance of germline stem cells; in somatic tissues, maternally provided GLP-1, acting as a receptor for the DSL family ligand APX-1, is required for inductive interactions that specify the fates of certain embryonic blastomeres; GLP-1 is also required for some later embryonic cell fate decisions, and in these decisions its activity is functionally redundant with that of LIN-12; GLP-1 expression is regulated temporally and spatially via translational control, as GLP-1 mRNA, present ubiquitously in the germline and embryo, yields detectable protein solely in lateral, interior, and endomembranes of distal, mitotic germ cells, and then predominantly in the AB blastomere and its descendants in the early embryo; proper spatial translation of glp-1 mRNA in the embryo is dependent upon genes such as the par genes, that are required for normal anterior-posterior asymmetry in the early embryo; signaling through GLP-1 controls the activity of the downstream Notch pathway components LAG-3 and LAG-1, the latter being predicted to function as part of a transcriptional feedback mechanism that positively regulates GLP-1 expression; signaling through the DNA-binding protein LAG-1 is believed to involve a direct interaction between LAG-1 and the GLP-1 RAM and ankyrin domains
KOG Annotation  Fibrillins and related proteins containing Ca2+-binding EGF-like domains
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:9097519..9098681)
Transcript overlap: 1113 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1071
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F02A9.6" Links  Wormbase NCBI
TH:320A6 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
TH:320A6 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:320A6 (PCR_reagent)
Remark  Phenotype comment -- Not yet confirmed by independent RNA
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Date  2000-11-16
Gene Plot of F02A9.6 Browse using GBrowse
Gene Graph