RNAi Experiment: TH:321G10 |
Ace View of TH:321G10
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Genes Inhibited |
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Gene Inhibited |
ZK1010.7 (col-97) |
Description of "ZK1010.7" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
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Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (III:12992108..12993200)
Transcript overlap: 976 nt |
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Sliding Window |
Raw score: 871
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.327 |
Wormbase (BLAST) |
RNAi primary |
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External "ZK1010.7" Links |
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Gene Inhibited |
Y54E10BL.2 (col-48) |
Description of "Y54E10BL.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 100
Relative score: 0.115 (Best raw score= for Gene )
Specificity index: 0.038 |
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External "Y54E10BL.2" Links |
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Gene Inhibited |
ZC513.8 (col-43) |
Description of "ZC513.8" |
col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 94
Relative score: 0.108 (Best raw score= for Gene )
Specificity index: 0.035 |
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External "ZC513.8" Links |
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Gene Inhibited |
T21B4.2 (col-85) |
Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 126
Relative score: 0.145 (Best raw score= for Gene )
Specificity index: 0.047 |
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External "T21B4.2" Links |
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Gene Inhibited |
F54B11.2 (col-44) |
Description of "F54B11.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 379
Relative score: 0.435 (Best raw score= for Gene )
Specificity index: 0.142 |
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External "F54B11.2" Links |
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Gene Inhibited |
F11G11.12 (col-73) |
Description of "F11G11.12" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 172
Relative score: 0.197 (Best raw score= for Gene )
Specificity index: 0.065 |
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External "F11G11.12" Links |
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Gene Inhibited |
C27H5.5 (col-36) |
Description of "C27H5.5" |
col-36 encodes a collagen protein; expressed during the L1 to L2 and L2 to dauer larval stage molts. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 132
Relative score: 0.152 (Best raw score= for Gene )
Specificity index: 0.05 |
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External "C27H5.5" Links |
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Gene Inhibited |
C09G5.5 (col-80) |
Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 227
Relative score: 0.261 (Best raw score= for Gene )
Specificity index: 0.085 |
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External "C09G5.5" Links |
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Gene Inhibited |
F01G12.5 (let-2) |
Description of "F01G12.5" |
let-2 encodes an alpha-2 type IV collagen, probably most closely equivalent to the human gene COL4A2 (OMIM:120090) on the basis of biological function; LET-2 is required for embryonic development and is a component of the basement membrane between muscle and hypodermis; LET-2 interacts with UNC-105, a mechanosensory ion channel of the degenerin ion channel superfamily that is expressed in muscle and required for normal growth, muscle contraction, and muscle organization. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 580
Relative score: 0.645 (Best raw score= for Gene )
Specificity index: 0.211 |
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External "F01G12.5" Links |
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TH:321G10 Phenotypes |
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Phenotype |
WTDIC phenotype -- Embryonic development normal
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TH:321G10 Experiment Details |
Ace View |
Laboratory |
TH |
RNAi Reagent & Type |
TH:321G10 (PCR_reagent) |
Reference |
Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...." |
Delivery Method |
Injection |
Date |
2000-11-16 |
Gene Plot of ZK1010.7 |
Browse using GBrowse
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Gene Plot of Y54E10BL.2 |
Browse using GBrowse
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Gene Plot of ZC513.8 |
Browse using GBrowse
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Gene Plot of T21B4.2 |
Browse using GBrowse
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Gene Plot of F54B11.2 |
Browse using GBrowse
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Gene Plot of F11G11.12 |
Browse using GBrowse
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Gene Plot of F01G12.5 |
Browse using GBrowse
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Gene Plot of C27H5.5 |
Browse using GBrowse
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Gene Plot of C09G5.5 |
Browse using GBrowse
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