Link to R10E11.8.3Link to R10E11.8.2Link to R10E11.8.1Link to R10E11.2.1Link to R10E11.2.2Link to R10E11.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to R10E11.8.3Link to R10E11.8.1Link to R10E11.8.2Link to R10E11.2.1Link to R10E11.2.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: TH:322C5 Ace View of TH:322C5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  R10E11.2 (vha-2)
Description of "R10E11.2"  vha-2 encodes a 16-kDa proteolipid of the vacuolar-type H+-ATPase (V-ATPase) not required for embryonic viability; VHA-2 is 100% identical to VHA-3 with respect to amino acid sequence; vha-2 is located in a polycistronic region with vha-1 and it is expressed in the excretory cell, rectum, and a pair of cells posterior to the anus.
KOG Annotation  Vacuolar H+-ATPase V0 sector, subunits c/c'
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:9781924..9782836)
Transcript overlap: 688 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 646
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "R10E11.2" Links  Wormbase NCBI
Gene Inhibited  R10E11.8 (vha-1)
Description of "R10E11.8"  vha-1 encodes a 16-kDa proteolipid of the vacuolar-type H+-ATPase (V-ATPase) and is required for embryogenesis and for oocyte ovulation, based on RNAi analysis; expressed in the excretory cells and the rectum of adult animals as well as in a pair of cells posterior to the anus.
KOG Annotation  Vacuolar H+-ATPase V0 sector, subunits c/c'
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 29 nt Explain types of evidence for RNAi inhibition
External "R10E11.8" Links  Wormbase NCBI
TH:322C5 Phenotypes Help with Phenotypes
Adult  Ste
TH:322C5 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:322C5 (PCR_reagent)
Remark  Phenotype comment -- Not yet confirmed by independent RNA
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Date  2000-11-16
Gene Plot of R10E11.8 Browse using GBrowse
Gene Graph
Gene Plot of R10E11.2 Browse using GBrowse
Gene Graph