RNAi Experiment: TH:322D5_2 |
Ace View of TH:322D5_2
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Genes Inhibited |
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Gene Inhibited |
K08E3.8 (mdt-29) |
Description of "K08E3.8" |
mdt-29 encodes a putative mediator subunit with a prion-like (asparagine- or glutamine-rich) domain; note that K08E3.8 is allegedly an ortholog of Drosophila INTERSEX/IX, but the actual C. elegans IX ortholog appears to be PQN-15); in yeast two-hybrid screens, MDT-29 interacts with SEL-7 and SEL-8; MDT-29 protein also self-associates; RNAi of K08E3.8 weakly enhances the two-anchor-cell phenotype of lin-12(ar170), roughly as much as sel-7 RNAi; since SEL-7 is a novel nuclear protein, MDT-29/SEL-7/SEL-8 is likely to form a nuclear complex formed in response to LIN-12 activation. |
Evidence for Inhibition |
ePCR |
Status: Best_ePCR (III:13776330..13777229)
Transcript overlap: 335 nt |
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Sliding Window |
Raw score: 293
Relative score: 0.936 (Best raw score= for Gene )
Specificity index: 0.41 |
Wormbase (BLAST) |
RNAi primary |
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External "K08E3.8" Links |
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Gene Inhibited |
C04H5.9 |
Evidence for Inhibition |
Sliding Window |
Raw score: 109
Relative score: 0.348 (Best raw score= for Gene )
Specificity index: 0.152 |
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External "C04H5.9" Links |
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Gene Inhibited |
3R5.2 |
Evidence for Inhibition |
Sliding Window |
Raw score: 313
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.438 |
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External "3R5.2" Links |
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TH:322D5_2 Phenotypes |
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Phenotype |
WTDIC phenotype -- Embryonic development normal
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TH:322D5_2 Experiment Details |
Ace View |
Laboratory |
TH |
RNAi Reagent & Type |
TH:322D5_2 (PCR_reagent) |
Remark |
This RNAi has multiple targets in the genome, see also RNAi: TH:322D5_1 |
Reference |
Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...." |
Delivery Method |
Injection |
Date |
2000-11-16 |
Gene Plot of K08E3.8 |
Browse using GBrowse
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Gene Plot of C04H5.9 |
Browse using GBrowse
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Gene Plot of 3R5.2 |
Browse using GBrowse
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