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RNAi Experiment: TH:329D10 Ace View of TH:329D10
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F54C4.1
KOG Annotation  Mitochondrial ribosomal protein L28
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:87621..89285)
Transcript overlap: 590 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 485
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F54C4.1" Links  Wormbase NCBI
Gene Inhibited  C29F9.7 (pat-4)
Description of "C29F9.7"  The pat-4 gene encodes a serine/threonine kinase orthologous to human integrin-linked kinase (ILK, OMIM:602366) and is required for formation of integrin-mediated muscle cell attachments during embryogenesis; PAT-4 probably functions as an adaptor molecule and localizes to dense bodies and M lines; PAT-4 forms a ternary complex with PAT-6/actopaxin and UNC-112, and requires UNC-112, UNC-52/perlecan, PAT-2/alpha integrin, and PAT-3/beta integrin for proper localization to newly forming integrin adhesion complexes.
KOG Annotation  Integrin-linked kinase
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 8 nt Explain types of evidence for RNAi inhibition
External "C29F9.7" Links  Wormbase NCBI
TH:329D10 Phenotypes Help with Phenotypes
Phenotype  WTDIC phenotype -- Embryonic development normal
TH:329D10 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:329D10 (PCR_reagent)
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Delivery Method  Injection
Date  2000-11-16
Gene Plot of F54C4.1 Browse using GBrowse
Gene Graph
Gene Plot of C29F9.7 Browse using GBrowse
Gene Graph