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RNAi Experiment: TH:329b10 Ace View of TH:329b10
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  B0412.4 (rps-29)
Description of "B0412.4"  rps-29 encodes a small ribosomal subunit S29 protein; by homology, RPS-29 is predicted to function in protein biosynthesis; in C. elegans, RPS-29 activity is broadly required for embryonic and germline development, normal body coloration and morphology, normal postembryonic growth rates, and the overall health of the animal.
KOG Annotation  40S ribosomal protein S29
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:793388..795080)
Transcript overlap: 321 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 279
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.542
Wormbase (BLAST) RNAi primary
External "B0412.4" Links  Wormbase NCBI
Gene Inhibited  F42G9.7 (snt-2)
KOG Annotation  Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (III:793388..795080)
Transcript overlap: 278 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 236
Relative score: 0.846 (Best raw score= for Gene )
Specificity index: 0.458
Wormbase (BLAST) RNAi primary
External "F42G9.7" Links  Wormbase NCBI
TH:329b10 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Adult  Dpy
Ste
TH:329b10 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:329b10 (PCR_reagent)
Remark  Phenotype comment -- Semi-sterile
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Date  2000-11-16
Gene Plot of F42G9.7 Browse using GBrowse
Gene Graph
Gene Plot of B0412.4 Browse using GBrowse
Gene Graph