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RNAi Experiment: TH:330A11 Ace View of TH:330A11
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  ZK652.1 (snr-5)
Description of "ZK652.1"  snr-5 encodes an ortholog of human small nuclear ribonucleoprotein SmF, a protein that forms part of a heptameric complex required for biogenesis and function of the snRNPs that catalyze mRNA splicing; in combination with the gene that encodes the human SmE and SmG orthologs (snr-6 and snr-7, respectively), snr-5 affects embryonic viability and nuclear association and localization of P granules in embryos, based on an RNAi assay; affects embryonic and larval viability based on large-scale RNAi assays; snr-5 is expressed in embryos and adult gonads.
KOG Annotation  Small nuclear ribonucleoprotein (snRNP) SMF
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:7861450..7862403)
Transcript overlap: 258 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 195
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "ZK652.1" Links  Wormbase NCBI
TH:330A11 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
TH:330A11 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:330A11 (PCR_reagent)
Remark  Phenotype comment -- Not yet confirmed by independent RNA
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Date  2000-11-16
Gene Plot of ZK652.1 Browse using GBrowse
Gene Graph