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RNAi Experiment: TH:330E5 Ace View of TH:330E5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C07H6.7 (lin-39)
Description of "C07H6.7"  lin-39 encodes a homeodomain protein homologous to the Deformed and Sex combs reduced family of homeodomain proteins; lin-39 is required cell autonomously for specification of mid-body region cell fates, including those of the VC neurons and the vulval precursor cells (VPCs), during postembryonic development; lin-39 activity is also required for normal migration of the QR, and to a lesser extent QL, neuroblasts and their descendants; in regions of the body where lin-39 expression overlaps with that of mab-5, another C. elegans HOM-C gene, the two genes appear to either compensate for one another's activity or act combinatorially to promote cell fates distinct from those where either gene is expressed alone; lin-39 transcripts are detected at all development stages, and a lin-39:lacZ reporter fusion is expressed in cells of the central body region, including ventral cord neurons and ventral epidermal cells, from mid-embryogenesis through larval and adult stages.
KOG Annotation  Transcription factor zerknullt and related HOX domain proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:7533860..7534690)
Transcript overlap: 370 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 349
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C07H6.7" Links  Wormbase NCBI
TH:330E5 Phenotypes Help with Phenotypes
Phenotype  WTDIC phenotype -- Embryonic development normal
TH:330E5 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:330E5 (PCR_reagent)
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Delivery Method  Injection
Date  2000-11-16
Gene Plot of C07H6.7 Browse using GBrowse
Gene Graph