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RNAi Experiment: TH:332A12 Ace View of TH:332A12
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y47D3A.26 (smc-3)
Description of "Y47D3A.26"  Associated GO Term : ATP binding
KOG Annotation  Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:11305680..11306818)
Transcript overlap: 348 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 280
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.812
Wormbase (BLAST) RNAi primary
External "Y47D3A.26" Links  Wormbase NCBI
Gene Inhibited  Y47D3A.25 (rab-35)
Description of "Y47D3A.25"  rab-35 encodes a small, monomeric Rab GTPase that is most closely related to the human and Drosophila Rab35 GTPases; by homology, RAB-35 is predicted to function as a membrane-associated GTPase required for intracellular vesicular trafficking and for regulation of endo- and exocytosis; however, as loss of rab-35 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of RAB-35 in C. elegans development and/or behavior is not yet known.
KOG Annotation  GTP-binding protein H-ray, small G protein superfamily
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 65 nt Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 65
Relative score: 0.232 (Best raw score= for Gene )
Specificity index: 0.188
Wormbase (BLAST) RNAi primary
External "Y47D3A.25" Links  Wormbase NCBI
TH:332A12 Phenotypes Help with Phenotypes
Phenotype  WTDIC phenotype -- Embryonic development normal
TH:332A12 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:332A12 (PCR_reagent)
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Delivery Method  Injection
Date  2000-11-16
Gene Plot of Y47D3A.25 Browse using GBrowse
Gene Graph
Gene Plot of Y47D3A.26 Browse using GBrowse
Gene Graph