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RNAi Experiment: TH:332d1 Ace View of TH:332d1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y56A3A.18
Description of "Y56A3A.18"  Associated GO Term : nucleic acid binding
KOG Annotation  U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top85_percentile_ePCR (III:11917822..11919164)
Transcript overlap: 395 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 353
Relative score: 0.836 (Best raw score= for Gene )
Specificity index: 0.455
Wormbase (BLAST) RNAi primary
External "Y56A3A.18" Links  Wormbase NCBI
Gene Inhibited  Y56A3A.20 (ccf-1)
Description of "Y56A3A.20"  a homolog of subunit 7 of CCR4-NOT transcription complex from S. cerevisiae.
KOG Annotation  mRNA deadenylase subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:11917822..11919164)
Transcript overlap: 443 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 422
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.545
Wormbase (BLAST) RNAi primary
External "Y56A3A.20" Links  Wormbase NCBI
TH:332d1 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
TH:332d1 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:332d1 (PCR_reagent)
Remark  Phenotype comment -- Confirmed with independent dsRNA ( Y56A3A.20-RNA2; similar phenotype).
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Date  2000-11-16
Gene Plot of Y56A3A.18 Browse using GBrowse
Gene Graph
Gene Plot of Y56A3A.20 Browse using GBrowse
Gene Graph