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RNAi Experiment: TH:335A2 Ace View of TH:335A2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  M01F1.8
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:3502127..3502899)
Transcript overlap: 350 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 306
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.648
Wormbase (BLAST) RNAi primary
External "M01F1.8" Links  Wormbase NCBI
Gene Inhibited  M01F1.2 (rpl-16)
Description of "M01F1.2"  rpl-16 encodes a large ribosomal subunit L13a protein.
KOG Annotation  60S ribosomal protein L13a
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 79 nt Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 79
Relative score: 0.275 (Best raw score= for Gene )
Specificity index: 0.178
Wormbase (BLAST) RNAi primary
External "M01F1.2" Links  Wormbase NCBI
Gene Inhibited  M01F1.3
Description of "M01F1.3"  This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial.
KOG Annotation  Lipoate synthase
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 77 nt Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 77
Relative score: 0.268 (Best raw score= for Gene )
Specificity index: 0.174
External "M01F1.3" Links  Wormbase NCBI
TH:335A2 Phenotypes Help with Phenotypes
Phenotype  WTDIC phenotype -- Embryonic development normal
TH:335A2 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:335A2 (PCR_reagent)
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Delivery Method  Injection
Date  2000-11-16
Gene Plot of M01F1.8 Browse using GBrowse
Gene Graph
Gene Plot of M01F1.3 Browse using GBrowse
Gene Graph
Gene Plot of M01F1.2 Browse using GBrowse
Gene Graph