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RNAi Experiment: TH:337F9 Ace View of TH:337F9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y111B2A.18 (rsp-3)
Description of "Y111B2A.18"  rsp-3 encodes a putative ortholog of human SF2/ASF and member of the SR protein family of nuclear phosphoproteins that are required for constitutive splicing and influence alternative splicing regulation; rsp-3 affects the development of oocytes together with rsr-1, and is required for late embryonic viability; SPK-1 binds directly to and phosphorylates the RS domain of RSP-3 in vitro and the mRNA of rsp-3 is predominantly expressed in the germline.
KOG Annotation  Alternative splicing factor ASF/SF2 (RRM superfamily)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:12686207..12687226)
Transcript overlap: 954 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 912
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "Y111B2A.18" Links  Wormbase NCBI
TH:337F9 Phenotypes Help with Phenotypes
Phenotype  WTDIC phenotype -- Embryonic development normal
TH:337F9 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  TH:337F9 (PCR_reagent)
Reference  Gonczy P et al. (2000) Nature "Functional genomic analysis of cell division in C. elegans using RNAi of genes on ...."
Delivery Method  Injection
Date  2000-11-16
Gene Plot of Y111B2A.18 Browse using GBrowse
Gene Graph