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RNAi Experiment: WBRNAi00038551 Ace View of WBRNAi00038551
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  B0041.7 (xnp-1)
Description of "B0041.7"  xnp-1 encodes an ATP-dependent DNA helicase of the SNF2 family that is orthologous to human XNP/ATR-X, which is associated with a number of X-linked mental retardation syndromes; in C. elegans, xnp-1 activity is required at high temperatures for embryogenesis, somatic gonad development, fertility, vulval morphogenesis, and meiotic X chromosome segregation; in addition, animals doubly mutant for xnp-1 and lin-35/Rb, hpl-2/HP1, or nucleosome remodelling and histone deacetylase (NuRD) complex members such as lin-53 and let-418, display larval arrest with growth cessation but continued cell proliferation; xnp-1 is also required, with lin-35/Rb and hpl-2/HP1, for proper regulation of transgene expression; xnp-1 mRNA, detectable in embryos and the germline by in situ hybridization, is expressed at highest levels in embryos with decreasing levels seen in successive larval stages; xnp-1 transcriptional reporter fusions exhibit strong expression beginning at mid-embryogenesis but fading by embryonic morphogenesis; at hatching, expression is observed in all dividing cells including the P lineage, and at later larval stages expression is observed in the vulval precursor cells.
KOG Annotation  Transcription regulator XNP/ATRX, DEAD-box superfamily
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:4669794..4670782)
Transcript overlap: 989 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 968
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "B0041.7" Links  Wormbase NCBI
WBRNAi00038551 Phenotypes Help with Phenotypes
Adult  Gon n=44
Ste n=10
WBRNAi00038551 Experiment Details Ace View
Laboratory  WY
RNAi Reagent & Type  WBPaper00024322:B0041_1.1 (PCR_reagent)
Remark  brood size = 8 +- 10 (n = 8)
Reference  Bender AM et al. (2004) Developmental Biology "lin-35/Rb and xnp-1/ATR-X function redundantly to control somatic gonad ...."
Delivery Method  Injection
Date  2004-7-24
Gene Plot of B0041.7 Browse using GBrowse
Gene Graph