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RNAi Experiment: WBRNAi00038570 Ace View of WBRNAi00038570
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C54D1.6 (bar-1)
Description of "C54D1.6"  bar-1 encodes a beta-catenin; during C. elegans development, BAR-1 likely functions as a transcriptional coactivator whose activity is required for Q neuroblast migration, P12 cell fate specification, and P3.p through P8.p vulval cell fate specification at two different stages of development; in specifying vulval cell fates, bar-1 interacts with Wnt and MAPK signaling pathways to regulate proper expression of the LIN-39 homeodomain transcription factor, overexpresion of which can partially rescue the bar-1 mutant phenotype; in yeast two-hybrid assays, BAR-1 interacts strongly with the POP-1/TCF transcription factor, and when fused to the Gal4 DNA binding domain, BAR-1 can function in yeast as a transcriptional coactivator; during larval development, BAR-1 expression begins in P3.p through P8.p at the late L1 stage and then disappears from these cells by the mid-L3 stage; BAR-1 is also expressed in P12, in the seam cells, and in cells of the somatic gonad; BAR-1 subcellular localization, assessed using an integrated transgene, reveals localization to the cytoplasm, nucleus, and cell junctions; genetic mosaic analyses indicate that, in P4.p and in P12, bar-1 acts cell autonomously to specify cell fates.
KOG Annotation  Armadillo/beta-Catenin/plakoglobin
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 2079
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C54D1.6" Links  Wormbase NCBI
WBRNAi00038570 Phenotypes Help with Phenotypes
Phenotype  Unclassified
WBRNAi00038570 Experiment Details Ace View
Laboratory  EW
RNAi Reagent & Type  probe_1:C54D1 (Unknown_reagent_type)
Strain  N2
Remark  100% of bar-1( RNAi) animals displayed a Spew or everted gonad phenotype.
Reference  Natarajan L et al. (2004) Developmental Biology "Identification of evolutionarily conserved promoter elements and amino acids ...."
Delivery Method  Bacterial_feeding
Date  2004-7-02
Gene Plot of C54D1.6 Browse using GBrowse
Gene Graph