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ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to B0222.6geneMap Link to F23H12.4.2Link to F23H12.4.1RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to K04H4.1bLink to K04H4.1aRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: [cgc5194]:emb-9 Ace View of [cgc5194]:emb-9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  T15B7.3 (col-143)
Description of "T15B7.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 377
Relative score: 0.082 (Best raw score= for Gene )
Specificity index: 0.066
External "T15B7.3" Links  Wormbase NCBI
Gene Inhibited  B0222.7 (col-145)
Description of "B0222.7"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 333
Relative score: 0.073 (Best raw score= for Gene )
Specificity index: 0.058
External "B0222.7" Links  Wormbase NCBI
Gene Inhibited  F23H12.4 (sqt-3)
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 121
Relative score: 0.026 (Best raw score= for Gene )
Specificity index: 0.021
External "F23H12.4" Links  Wormbase NCBI
Gene Inhibited  F59E12.12 (bli-2)
Description of "F59E12.12"  A cuticle collagen involved in strut assembly in the adult cuticle.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 209
Relative score: 0.046 (Best raw score= for Gene )
Specificity index: 0.036
External "F59E12.12" Links  Wormbase NCBI
Gene Inhibited  K04H4.1 (emb-9)
Description of "K04H4.1"  emb-9 encodes the alpha-1 chain of Type IV basement membrane collagen most closely equivalent to human COL4A1 (OMIM:120130) on the basis of biological function; EMB-9 forms heterotrimeric Type IV collagen with LET-2, the alpha-2-like chain, and is required for the assembly and/or secretion of LET-2; EMB-9 is essential for embryonic morphogenesis, particularly epidermal elongation, and for larval development; EMB-9 is expresed primarily by body wall muscles and some somatic cells of the gonad and is detected in nearly all basement membranes.
Evidence for Inhibition 
Sliding Window Raw score: 5098
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.796
Wormbase (BLAST) RNAi primary
External "K04H4.1" Links  Wormbase NCBI
Gene Inhibited  M18.1 (col-129)
Description of "M18.1"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 133
Relative score: 0.029 (Best raw score= for Gene )
Specificity index: 0.023
External "M18.1" Links  Wormbase NCBI
[cgc5194]:emb-9 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
[cgc5194]:emb-9 Experiment Details Ace View
Laboratory  NR
RNAi Reagent & Type  [cgc5194]:emb-9 (cDNA_reagent)
Strain  SU93
Reference  Tsuboi D et al. (2002) Biochemical and Biophysical Research Communications "Isolation of the interacting molecules with GEX-3 by a novel functional ...."
Delivery Method  Injection
Date  2002-2-27
Gene Plot of T15B7.3 Browse using GBrowse
Gene Graph
Gene Plot of F23H12.4 Browse using GBrowse
Gene Graph
Gene Plot of B0222.7 Browse using GBrowse
Gene Graph
Gene Plot of K04H4.1 Browse using GBrowse
Gene Graph
Gene Plot of F59E12.12 Browse using GBrowse
Gene Graph
Gene Plot of M18.1 Browse using GBrowse
Gene Graph