CDS: C06G4.2a
C06G4.2a | SMap | S_parent | Sequence | C06G4 | |
---|---|---|---|---|---|
Structure | Source_exons (14) | ||||
DB_info | Database (3) | ||||
Protein_id | C06G4 | AAV58887 | 1 | ||
DB_remark | C. elegans CLP-1 protein; contains similarity to Pfam domains PF01067 (Calpain large subunit, domain III), PF00648 (Calpain family cysteine protease)contains similarity to Interpro domains IPR000169 (Peptidase, cysteine peptidase active site), IPR001300 (Peptidase C2, calpain) | ||||
Origin (2) | |||||
Properties | Coding (2) | ||||
Isoform | Accession_evidence | EMBL | BJ124914 | ||
Visible | Gene | C06G4.2 | |||
Corresponding_transcript | C06G4.2a.1 | ||||
C06G4.2a.2 | |||||
Corresponding_protein | WP:CE37743 | ||||
Corresponding_PCR_product (8) | |||||
Matching_cDNA (4) | |||||
WB_RNAi_result (10) | |||||
GO_term (5) | |||||
Variation (5) | |||||
Microarray_results (7) | |||||
Brief_identification | calpain | ||||
Remark | added new last intron and exon based on EST data - 01-05-07 js | ||||
added the first two exons and exon 12 based on EST data - 02-04-01 js | |||||
SL1 trans-spliced; see yk1317a01.5 | |||||
yk1322d11.3 indicates there is an intron in the 3' UTR but the splices sites are very unusual - 02-04-01 js | |||||
removed an internal exon based on EST data(yk1317a01.3)[20041110 po] | |||||
this isoform is based on EMBL accession BJ124914 | |||||
Associated_feature | WBsf002547 | ||||
Method | curated |