CDS: W02B9.1a
W02B9.1a | SMap | S_parent | Sequence | W02B9 | |
---|---|---|---|---|---|
Structure | Source_exons (10) | ||||
DB_info | Database (2) | ||||
Protein_id | W02B9 | CAB61036 | 1 | ||
DB_remark | C. elegans HMR-1 protein; contains similarity to Pfam domains PF02210 (Laminin G domain), PF00054 (Laminin G domain), PF00028 (Cadherin domain), PF01049 (Cadherin cytoplasmic region)contains similarity to Interpro domains IPR000742 (EGF-like, subtype 2), IPR001791 (Laminin G), IPR000233 (Cadherin cytoplasmic region), IPR006209 (EGF-like), IPR000152 (Aspartic acid and asparagine hydroxylation site), IPR006210 (Type I EGF), IPR002126 (Cadherin), IPR012680 (Laminin G, subdomain 2) | ||||
Origin (2) | |||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | Accession_evidence | NDB | AV191843 | ||
Inferred_automatically | transcript_builder | ||||
Visible | Gene | W02B9.1 | |||
Corresponding_transcript | W02B9.1a | ||||
Corresponding_protein | WP:CE25133 | ||||
Corresponding_PCR_product | cenix:141-f9 | ||||
sjj_W02B9.1 | |||||
mv_AAB94553 | |||||
smd_1W02B9.1 | |||||
Corresponding_RNAi_reagent | Cenix:141-f9 | ||||
sjj_W02B9.1 | |||||
Matching_cDNA | yk598f1.5 | Inferred_automatically | transcript_builder.pl | ||
yk425e4.5 | Inferred_automatically | transcript_builder.pl | |||
yk389b7.5 | Inferred_automatically | transcript_builder.pl | |||
AF016854 | Inferred_automatically | transcript_builder.pl | |||
RNAi_result | JA:W02B9.1 | ||||
Simmer:W02B9.1:Screen_A | |||||
Simmer:W02B9.1:Screen_B | |||||
Cenix:141-f9 | |||||
WB_RNAi_result (5) | |||||
GO_term (8) | |||||
Variation (5) | |||||
Microarray_results | SMD_1W02B9.1 | ||||
175623_s_at | |||||
192793_s_at | |||||
Aff_W02B9.1 | |||||
Brief_identification | Cadherin, Laminin G domain | ||||
Remark | Annotated using Pfam | ||||
[991111 dl] : Modified prediction based on cDNA data. Truncated N-terminal exon by 46 aa | |||||
Method | curated |