CDS: W02B9.1a
W02B9.1a | SMap | S_parent | Sequence | W02B9 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 323 | ||
5577 | 5710 | ||||
6270 | 6429 | ||||
7159 | 7396 | ||||
10057 | 10533 | ||||
12017 | 12537 | ||||
13324 | 14005 | ||||
14669 | 15070 | ||||
16162 | 16644 | ||||
17499 | 17750 | ||||
DB_info | Database (2) | ||||
Protein_id | W02B9 | CAB61036 | 1 | ||
DB_remark | C. elegans HMR-1 protein; contains similarity to Pfam domains PF02210 (Laminin G domain), PF00054 (Laminin G domain), PF00028 (Cadherin domain), PF01049 (Cadherin cytoplasmic region)contains similarity to Interpro domains IPR000742 (EGF-like, subtype 2), IPR001791 (Laminin G), IPR000233 (Cadherin cytoplasmic region), IPR006209 (EGF-like), IPR000152 (Aspartic acid and asparagine hydroxylation site), IPR006210 (Type I EGF), IPR002126 (Cadherin), IPR012680 (Laminin G, subdomain 2) | ||||
Origin | From_laboratory | HX | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | Accession_evidence | NDB | AV191843 | ||
Inferred_automatically | transcript_builder | ||||
Visible | Gene | W02B9.1 | |||
Corresponding_transcript | W02B9.1a | ||||
Corresponding_protein | WP:CE25133 | ||||
Corresponding_PCR_product (4) | |||||
Corresponding_RNAi_reagent | Cenix:141-f9 | ||||
sjj_W02B9.1 | |||||
Matching_cDNA | yk598f1.5 | Inferred_automatically | transcript_builder.pl | ||
yk425e4.5 | Inferred_automatically | transcript_builder.pl | |||
yk389b7.5 | Inferred_automatically | transcript_builder.pl | |||
AF016854 | Inferred_automatically | transcript_builder.pl | |||
RNAi_result | JA:W02B9.1 | ||||
Simmer:W02B9.1:Screen_A | |||||
Simmer:W02B9.1:Screen_B | |||||
Cenix:141-f9 | |||||
WB_RNAi_result (5) | |||||
GO_term (8) | |||||
Variation (5) | |||||
Microarray_results (4) | |||||
Brief_identification | Cadherin, Laminin G domain | ||||
Remark | Annotated using Pfam | ||||
[991111 dl] : Modified prediction based on cDNA data. Truncated N-terminal exon by 46 aa | |||||
Method | curated |